Volume 2 Number 2 (Mar. 2013)
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IJCCE 2013 Vol.2(2): 174-178 ISSN: 2010-3743
DOI: 10.7763/IJCCE.2013.V2.164

Analysis of Population Based Metaheuristic Used for Gene Clustering

Arpit Jain , Shikha Agrawal, Jitendra Agrawal , and Sanjeev Sharma
Abstract—Gene Clustering is one of the most popular application in the field of Bioinformatics. It is a method of grouping gene into clusters, such that each cluster must have similar gene expression levels. The two most popular population based globalized search algorithms Particle Swarm Optimization (PSO) and Genetic Algorithm (GA) are used for clustering gene expression data but the main drawback of these two algorithm’s is that they got trapped in local optima while exploring across the problem space. So the PSO and GA has been hybridized with several other methods, to overcome the local optima problem. This paper presents a literature survey of both GA and PSO’s application in Gene Clustering. PSO and GA variants and their hybridization with other metaheuristics are also described in this paper. An attempt is made to provide a guide for the researchers who are working in the area of population based gene clustering.

Index Terms—Genetic Algorithm, K-means, Particle Swarm Optimization, SVM.

Arpit Jain, Jitendra Agrawal, and Sanjeev Sharma are with School of Information Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya Bhopal, India (e-mail: arpitcs09@gmail.com, jitendra@rgtu.net, sanjeev@rgtu.net).
Shikha Agrawal is with University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya Bhopal, India (e-mail: shikha@rgtu.net).


Cite: Arpit Jain , Shikha Agrawal, Jitendra Agrawal , and Sanjeev Sharma, "Analysis of Population Based Metaheuristic Used for Gene Clustering," International Journal of Computer and Communication Engineering vol. 2, no. 2, pp. 174-178, 2013.

General Information

ISSN: 2010-3743 (Online)
Abbreviated Title: Int. J. Comput. Commun. Eng.
Frequency: Quarterly
Editor-in-Chief: Dr. Maode Ma
Abstracting/ Indexing: INSPEC, CNKI, Google Scholar, Crossref, EBSCO, ProQuest, and Electronic Journals Library
E-mail: ijcce@iap.org
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